JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP65_chr2_218997846_219046516	0/0	a0026	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0027	1925	1	0	1	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0028	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0029	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0030	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0031	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0032	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0033	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0034	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0035	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0036	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0037	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0038	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0039	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0040	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0041	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0042	1925	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP68_chr11_111874541_111890975	1/1	a0001	150	365	92	72	149	12	38	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	a0002	150	24	0	0	23	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	a0003	150	2	0	2	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	a0004	150	1	0	0	0	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP69_chr7_90240174_90316063	0/0	a0001	941	181	44	22	94	3	18	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/1	a0002	941	118	21	22	51	5	18	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	1/0	a0003	941	17	3	9	0	3	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0004	941	6	5	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0005	941	4	3	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0006	941	4	4	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0007	941	4	0	2	0	1	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0008	941	2	2	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0009	941	1	0	0	1	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	a0010	941	1	0	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP70_chr10_73248762_73363864	1/1	a0001	1121	126	40	9	63	0	12	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0002	1121	65	9	5	44	0	7	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0003	1121	13	12	1	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0004	1121	6	4	2	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0005	1121	2	1	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0006	1121	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0007	1121	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0008	1121	1	0	1	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0009	1121	1	0	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0010	1121	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0011	1121	1	0	0	0	0	1	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0012	1121	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	a0013	1121	1	0	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP73_chr12_113144724_113164276	1/1	a0001	308	280	75	42	120	14	27	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	a0002	308	35	0	0	34	0	1	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	a0003	301	5	0	0	5	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	a0004	308	4	4	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	a0005	301	1	0	0	1	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	a0006	308	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276