JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP74_chr1_1916957_2008786	0/1	a0001	1639	54	3	13	23	4	10	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0002	1639	38	24	3	5	0	6	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0003	1640	27	4	4	12	5	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0004	1639	22	1	9	4	0	8	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	1/0	a0005	1639	15	3	2	7	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0006	1639	8	3	0	5	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0007	1639	7	3	0	2	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0008	1639	7	0	4	3	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0009	1639	6	2	2	1	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0010	1640	5	0	1	4	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0011	1640	5	2	2	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0012	1639	5	5	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0013	1640	4	0	0	4	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0014	1639	4	4	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0015	1640	4	3	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0016	1639	4	3	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0017	1640	3	0	0	2	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0018	1640	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0019	1640	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0020	1639	2	0	0	1	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0021	1639	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0022	1639	2	0	0	0	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0023	1640	2	1	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0024	1640	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0025	1640	2	2	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0026	1640	2	2	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0027	1639	2	1	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0028	1639	2	0	0	1	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0029	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0030	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0031	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0032	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0033	1639	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0034	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0035	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0036	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0037	1639	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0038	1639	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0039	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0040	1639	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0041	1649	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0042	1639	1	0	0	0	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0043	1635	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0044	1639	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0045	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0046	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0047	1639	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0048	1640	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0049	1640	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0050	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786