JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP99_chr4_2413955_2468002	0/0	a0009	73	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0010	187	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0011	646	1	0	0	0	0	1	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0012	646	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0013	646	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0014	646	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	1/0	a0015	646	1	0	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0016	646	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0017	646	1	1	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFB_chr6_31941095_31957084	0/1	a0001	764	274	35	47	155	12	24	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0002	764	76	37	9	21	2	7	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0003	764	37	15	7	7	2	6	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0004	764	15	0	5	7	1	2	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0005	764	8	2	5	0	1	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0006	764	6	0	6	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0007	764	5	1	3	0	0	1	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0008	764	5	1	0	0	0	4	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0009	764	2	2	0	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0010	764	1	0	0	1	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0011	764	1	1	0	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	a0012	764	1	0	0	1	0	0	copy fasta	CFB	chr6	31941095	31957084
CFC1B_chr2_130516222_130533603	0/0	a0001	223	6	4	2	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	a0002	223	3	3	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	a0003	223	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	a0004	223	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	a0005	223	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1_chr2_130587165_130604575	0/0	a0001	223	227	28	38	126	9	26	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0002	223	4	0	2	1	1	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0003	223	3	1	2	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0004	223	2	1	1	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0005	223	2	2	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0006	223	2	0	2	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0007	223	1	0	1	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	a0008	223	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFDP1_chr16_75288710_75438503	1/1	a0001	299	309	94	47	115	17	34	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	a0002	299	2	0	0	2	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	a0003	22	1	0	0	0	1	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	a0004	299	1	0	0	1	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	a0005	299	1	0	1	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFD_chr19_854664_868641	0/1	a0001	253	268	60	51	109	10	37	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	a0002	253	17	0	1	15	0	1	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	a0003	253	2	2	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFHR1_chr1_196814731_196837189	0/0	a0001	330	136	11	26	91	6	2	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	1/0	a0002	330	127	9	24	77	4	12	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0003	330	7	3	0	4	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0004	330	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0005	128	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0006	330	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0007	330	1	1	0	0	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	a0008	330	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189