JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFHR2_chr1_196938738_196964622	1/1	a0001	270	356	85	65	149	17	38	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0002	128	6	0	0	6	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0003	270	2	0	2	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0004	270	2	0	0	2	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0005	270	1	1	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0006	270	1	0	0	1	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0007	270	1	0	0	0	1	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	a0008	270	1	0	1	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR3_chr1_196769840_196800407	1/0	a0001	330	128	3	40	70	8	6	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0002	330	122	12	10	93	2	5	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0003	330	5	0	0	5	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0004	330	2	2	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0005	330	2	2	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0006	330	1	0	0	0	0	1	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	a0007	330	1	1	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR4_chr1_196883052_196923633	0/0	a0001	578	208	17	42	119	7	23	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/1	a0002	578	119	54	15	30	4	15	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0003	578	5	0	4	0	1	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	1/0	a0004	578	4	3	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0005	578	3	3	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0006	578	2	1	1	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0007	578	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0008	578	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0009	578	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0010	578	1	0	0	0	0	1	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0011	578	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0012	578	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0013	444	1	0	0	0	0	1	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0014	578	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	a0015	578	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR5_chr1_196972556_197014678	1/1	a0001	569	329	69	59	143	14	42	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0002	569	15	10	0	5	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0003	569	3	2	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0004	567	2	2	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0005	569	2	1	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0006	569	1	0	0	1	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0007	569	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0008	569	1	0	0	1	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0009	569	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	a0010	569	1	0	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFH_chr1_196647043_196752504	0/0	a0001	1231	123	31	23	52	2	15	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0002	1231	64	2	10	46	2	4	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	1/0	a0003	1231	40	4	19	6	4	6	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/1	a0004	1231	29	8	10	3	2	5	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0005	1231	17	15	2	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0006	1231	7	5	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0007	1231	5	5	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0008	1231	4	2	1	0	0	1	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0009	1231	3	1	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0010	1231	2	0	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504