JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFH_chr1_196647043_196752504	0/0	a0011	1231	2	2	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0012	1231	2	2	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0013	1231	2	0	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0014	1231	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0015	1231	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0016	1231	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0017	1231	1	0	0	0	0	1	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0018	1231	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0019	1231	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0020	1231	1	0	1	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	a0021	1231	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFI_chr4_109735695_109806999	0/1	a0001	583	310	77	63	134	14	21	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0002	583	17	0	0	15	0	2	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	1/0	a0003	583	15	13	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0004	583	4	0	0	4	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0005	583	2	0	2	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0006	583	1	0	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0007	583	1	0	0	0	0	1	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0008	583	1	0	0	1	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0009	583	1	1	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0010	583	1	0	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	a0011	583	1	1	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFL1_chr11_65849673_65863180	1/1	a0001	166	394	90	68	180	12	42	copy fasta	CFL1	chr11	65849673	65863180
CFL2_chr14_34704113_34719593	1/0	a0001	166	431	98	76	188	18	50	copy fasta	CFL2	chr14	34704113	34719593
CFLAR_chr2_201111164_201181687	1/1	a0001	480	221	76	55	56	10	22	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	a0002	480	12	12	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	a0003	480	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFP_chrX_47618282_47634930	1/1	a0001	469	295	73	61	121	11	27	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	a0002	469	3	3	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	a0003	469	2	0	2	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	a0004	469	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	a0005	469	1	0	0	0	0	1	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	a0006	469	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFTR_chr7_117475025_117673665	0/1	a0001	1480	127	60	19	31	4	12	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	1/0	a0002	1480	55	4	10	28	4	8	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0003	1480	4	0	0	4	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0004	1480	2	0	0	1	1	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0005	1480	2	2	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0006	1480	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0007	1480	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0008	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0009	1480	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0010	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0011	1480	1	0	0	0	1	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0012	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0013	1480	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0014	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0015	1480	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0016	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	a0017	1480	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665