JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHAC1_chr15_40948471_40961512	0/0	a0005	222	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	a0006	222	1	0	0	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	a0007	222	1	0	0	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC2_chr2_53762804_53780196	1/1	a0001	184	423	93	64	204	16	44	copy fasta	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	a0002	184	3	3	0	0	0	0	copy fasta	CHAC2	chr2	53762804	53780196
CHADL_chr22_41224513_41245931	1/1	a0001	762	375	71	66	171	18	47	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0002	762	29	16	8	5	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0003	762	3	3	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0004	762	2	2	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0005	762	1	0	0	0	0	1	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0006	762	1	1	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0007	762	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0008	762	1	1	0	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHADL_chr22_41224513_41245931	0/0	a0009	762	1	0	1	0	0	0	copy fasta	CHADL	chr22	41224513	41245931
CHAD_chr17_50459496_50473880	1/1	a0001	359	363	72	72	161	16	40	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0002	359	7	7	0	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0003	359	6	3	3	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0004	359	5	4	1	0	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0005	359	2	0	0	0	0	2	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0006	359	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0007	359	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAD_chr17_50459496_50473880	0/0	a0008	359	1	0	0	1	0	0	copy fasta	CHAD	chr17	50459496	50473880
CHAF1A_chr19_4397640_4448397	0/1	a0001	956	225	45	50	101	9	19	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	1/0	a0002	956	114	20	19	49	7	18	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0003	956	12	12	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0004	956	11	2	0	7	0	2	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0005	956	7	7	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0006	956	3	0	0	0	0	3	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0007	956	2	1	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0008	956	2	0	2	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0009	254	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0010	956	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0011	956	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0012	956	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0013	956	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0014	956	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0015	956	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	a0016	956	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1B_chr21_36380392_36424015	1/1	a0001	559	324	83	64	122	8	45	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	a0002	559	8	6	2	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	a0003	559	7	0	4	0	2	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	a0004	559	4	1	3	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	a0005	559	3	2	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAMP1_chr13_114309503_114332322	1/1	a0001	812	396	77	67	198	10	42	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0002	812	4	0	0	4	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0003	812	3	0	1	0	2	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0004	812	3	3	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0005	812	3	3	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0006	812	2	0	0	2	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	a0007	812	2	1	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322