JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHAMP1_chr13_114309503_114332322	0/0	a0008	812	1	0	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAT_chr10_49609037_49672942	0/1	a0001	748	261	76	56	82	13	33	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0002	748	67	0	16	36	4	11	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0003	748	63	1	4	58	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	1/0	a0004	748	11	10	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0005	748	2	0	0	2	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0006	748	2	2	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0007	748	2	0	0	2	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0008	748	1	0	0	0	1	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0009	748	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0010	748	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0011	748	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0012	748	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0013	748	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0014	748	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0015	748	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0016	748	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	a0017	748	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHCHD10_chr22_23760834_23772972	0/1	a0001	142	405	75	79	186	16	48	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	a0002	142	20	19	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	a0003	142	3	2	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	a0004	142	2	2	0	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	a0005	142	1	0	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD1_chr10_73777048_73788652	0/0	a0001	118	340	82	57	151	12	38	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	a0002	118	1	0	1	0	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	a0003	118	1	0	0	1	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD2_chr7_56096573_56111476	1/1	a0001	151	437	96	73	204	18	44	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	a0002	151	4	0	0	4	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	a0003	151	1	0	1	0	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD3_chr7_132779870_133087090	1/1	a0001	227	309	75	64	116	16	36	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	a0002	227	1	1	0	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD4_chr3_14107077_14129870	1/1	a0001	142	415	96	72	188	14	43	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	a0002	142	1	0	0	0	0	1	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD5_chr2_112579609_112594040	1/1	a0001	110	438	96	76	208	16	40	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	a0002	110	2	2	0	0	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	a0003	110	2	0	0	2	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	a0004	110	1	0	0	1	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	a0005	110	1	0	0	1	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD6_chr3_126699240_126965420	1/1	a0001	235	129	51	37	20	4	15	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0002	235	81	17	12	39	2	11	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0003	235	2	2	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0004	235	1	1	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0005	235	1	0	0	1	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0006	235	1	1	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	a0007	235	1	0	1	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD7_chr8_56206789_56223809	1/1	a0001	85	383	92	70	166	13	40	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	a0002	85	1	0	0	0	1	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCT1_chr17_60417489_60436426	1/1	a0001	236	270	47	67	130	4	20	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	a0002	236	51	48	3	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426
CHCT1_chr17_60417489_60436426	0/0	a0003	236	1	1	0	0	0	0	copy fasta	CHCT1	chr17	60417489	60436426