JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHD1L_chr1_147237684_147300762	1/0	a0001	897	257	62	46	128	6	14	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0002	897	61	2	9	36	6	8	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/1	a0003	897	58	2	16	21	2	16	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0004	897	17	13	1	1	0	2	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0005	897	9	9	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0006	897	5	4	0	0	0	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0007	897	2	0	2	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0008	27	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0009	897	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0010	897	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0011	897	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0012	897	1	1	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0013	897	1	0	0	0	0	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0014	897	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0015	897	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	a0016	897	1	1	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1_chr5_98848985_98934007	1/1	a0001	1710	260	60	43	119	7	29	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	a0002	1709	71	28	18	20	2	3	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	a0003	1709	1	0	0	0	1	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	a0004	1710	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	a0005	1710	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD2_chr15_92895324_93032996	1/1	a0001	1828	306	72	74	106	16	36	copy fasta	CHD2	chr15	92895324	93032996
CHD3_chr17_7883789_7917755	1/1	a0001	2000	324	63	72	134	15	38	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	a0002	2000	38	21	3	13	1	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	a0003	2000	1	0	1	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	a0004	2000	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	a0005	2000	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	a0006	2000	1	0	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD4_chr12_6565082_6612379	0/1	a0001	1912	205	74	31	74	5	20	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	1/0	a0002	1912	156	9	39	83	7	17	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	a0003	1912	7	7	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	a0004	1912	4	0	0	3	0	1	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	a0005	1912	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	a0006	1912	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD5_chr1_6096787_6185321	0/0	a0001	1954	244	58	31	118	6	31	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	1/1	a0002	1954	69	36	21	0	4	6	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	a0003	1954	4	0	0	4	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	a0004	1954	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	a0005	1954	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	a0006	1954	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD6_chr20_41397083_41623377	1/1	a0001	2715	286	72	45	129	12	26	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0002	2715	6	0	0	6	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0003	2715	5	1	3	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0004	2715	5	2	1	0	0	2	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0005	2715	4	3	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0006	2715	3	0	2	0	0	1	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0007	2715	2	0	2	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0008	2715	2	0	0	2	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0009	1664	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0010	2715	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377