JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHD6_chr20_41397083_41623377	0/0	a0011	2715	1	0	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0012	2715	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0013	2715	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0014	2715	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0015	2715	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0016	2715	1	0	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0017	2715	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0018	2715	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	a0019	2715	1	0	0	0	0	1	copy fasta	CHD6	chr20	41397083	41623377
CHD7_chr8_60673740_60873028	1/1	a0001	2997	216	57	42	82	11	22	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0002	2997	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0003	2997	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0004	2997	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0005	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0006	2997	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0007	2997	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0008	2997	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0009	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0010	2997	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0011	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0012	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0013	2997	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0014	2997	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0015	2997	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0016	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0017	2997	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0018	2997	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0019	2997	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	a0020	2997	1	0	0	0	1	0	copy fasta	CHD7	chr8	60673740	60873028
CHD8_chr14_21380199_21461123	1/1	a0001	2581	177	67	38	43	6	21	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0002	2581	74	22	12	32	4	4	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0003	2581	4	0	0	4	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0004	2581	1	0	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0005	2581	1	0	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0006	2581	1	0	0	0	0	1	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0007	2581	1	0	0	1	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	a0008	2581	1	1	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD9NB_chr16_53036484_53057897	1/1	a0001	52	325	89	49	139	9	37	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	a0002	52	81	5	21	39	7	9	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9_chr16_53049991_53332497	0/1	a0001	2897	147	63	13	50	5	15	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0002	2897	49	8	9	19	4	9	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	1/0	a0003	2897	34	5	4	19	1	4	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0004	2897	3	0	0	3	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0005	2897	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0006	2897	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0007	2897	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0008	2897	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	a0009	2897	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHDH_chr3_53807335_53851419	0/1	a0001	594	216	57	43	81	10	24	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	a0002	594	130	29	16	78	2	5	copy fasta	CHDH	chr3	53807335	53851419