JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHGA_chr14_92918150_92940285	0/0	a0027	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGB_chr20_5906510_5930353	0/0	a0001	677	104	7	14	68	6	9	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/1	a0002	677	87	17	21	28	6	14	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0003	677	66	4	0	59	0	3	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0004	677	58	13	17	17	0	11	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	1/0	a0005	677	42	13	17	1	5	5	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0006	677	22	0	0	20	1	1	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0007	677	20	19	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0008	677	9	4	1	4	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0009	677	7	7	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0010	677	5	0	5	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0011	677	4	4	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0012	677	3	3	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0013	677	2	0	0	2	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0014	677	2	1	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0015	677	2	0	0	2	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0016	179	1	0	0	0	0	1	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0017	677	1	0	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0018	677	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0019	677	1	0	0	1	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0020	677	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0021	677	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	a0022	677	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHI3L1_chr1_203173931_203191704	1/0	a0001	383	309	76	59	145	8	20	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/1	a0002	383	149	21	22	70	8	27	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0003	383	4	0	0	4	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0004	383	2	0	2	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0005	383	1	0	1	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0006	383	1	0	0	0	0	1	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0007	383	1	0	0	1	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	a0008	383	1	1	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L2_chr1_111222713_111248440	1/1	a0001	390	338	85	47	171	7	26	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0002	390	57	1	19	31	4	2	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0003	390	26	3	4	2	3	14	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0004	390	4	4	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0005	390	2	0	2	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0006	390	2	0	2	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0007	390	2	0	0	2	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0008	390	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0009	390	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	a0010	323	1	1	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHIA_chr1_111285851_111325563	1/0	a0001	476	166	17	41	92	6	9	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0002	476	123	7	14	75	5	22	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0003	476	42	18	7	9	1	7	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0004	476	33	18	10	0	0	5	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0005	476	25	20	0	3	1	1	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0006	476	11	4	3	2	2	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0007	476	7	0	0	7	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0008	383	4	4	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0009	476	4	0	0	4	0	0	copy fasta	CHIA	chr1	111285851	111325563