JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHIA_chr1_111285851_111325563	0/0	a0010	168	3	3	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/1	a0011	476	2	0	0	0	1	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0012	476	2	1	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0013	383	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0014	476	1	0	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0015	476	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	a0016	476	1	0	1	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIC1_chrX_73558197_73692111	1/1	a0001	224	208	64	43	68	9	22	copy fasta	CHIC1	chrX	73558197	73692111
CHIC2_chr4_54004789_54069605	1/1	a0001	165	244	84	42	70	16	30	copy fasta	CHIC2	chr4	54004789	54069605
CHID1_chr11_862859_915810	0/0	a0001	393	213	43	24	109	7	30	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	1/0	a0002	393	160	43	42	57	7	10	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/1	a0003	393	10	0	7	0	2	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	a0004	393	2	2	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	a0005	393	1	0	1	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHIT1_chr1_203211079_203234673	0/0	a0001	357	162	3	31	106	2	20	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	1/0	a0002	466	120	45	26	28	6	14	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0003	466	113	21	13	65	6	8	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/1	a0004	466	22	1	15	0	3	2	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0005	466	12	2	0	9	0	1	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0006	466	11	11	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0007	396	10	10	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0008	466	9	0	0	8	0	1	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0009	357	6	0	0	4	0	2	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0010	466	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0011	466	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0012	466	2	0	0	2	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0013	357	2	0	0	2	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0014	466	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0015	456	1	0	1	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0016	357	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0017	357	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0018	357	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0019	466	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0020	357	1	0	0	0	1	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0021	466	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0022	466	1	1	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	a0023	357	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHKA_chr11_68047859_68126388	1/1	a0001	457	276	86	48	98	14	28	copy fasta	CHKA	chr11	68047859	68126388
CHKB_chr22_50573963_50587849	1/1	a0001	395	410	100	67	182	14	45	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	a0002	395	2	0	0	0	2	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	a0003	395	1	0	1	0	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	a0004	395	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	a0005	395	1	0	0	0	0	1	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	a0006	395	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHL1_chr3_191763_414417	0/1	a0001	1224	154	18	34	71	8	22	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0002	1224	57	15	9	25	1	7	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0003	1224	23	22	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0004	1224	13	13	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0005	1224	5	0	4	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0006	1224	5	3	2	0	0	0	copy fasta	CHL1	chr3	191763	414417