Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAM33_chr20_3662975_3687010	0/0	a0003	813	20	0	9	1	3	7	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0004	813	18	18	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0005	813	9	5	0	4	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0006	813	6	5	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0007	813	5	5	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0008	813	3	0	0	3	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0009	813	3	2	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0010	813	2	2	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0011	813	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0012	813	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0013	813	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0014	813	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0015	813	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0016	813	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0017	813	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0018	813	1	0	0	0	1	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0019	817	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM7_chr8_24436026_24514565	1/0	a0001	755	234	60	49	93	10	21	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/1	a0002	755	77	5	16	39	3	13	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0003	755	16	12	2	1	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0004	755	10	0	5	5	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0005	755	10	10	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0006	755	2	2	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0007	755	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0008	755	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0009	755	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0010	755	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0011	755	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0012	755	1	0	0	0	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0013	755	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0014	755	1	0	0	0	1	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0015	755	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0016	755	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	a0017	755	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM8_chr10_133257423_133281868	0/1	a0001	824	262	47	60	109	12	33	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	1/0	a0002	824	41	8	9	18	1	4	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0003	824	20	16	4	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0004	824	12	12	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0005	824	6	0	0	6	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0006	824	5	5	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0007	824	5	0	5	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0008	824	4	1	0	0	2	1	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0009	824	4	0	0	4	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0010	824	3	0	0	3	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0011	824	2	0	0	2	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0012	824	2	2	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0013	824	2	1	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0014	824	2	0	0	2	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0015	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0016	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868