JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHL1_chr3_191763_414417	1/0	a0007	1224	5	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0008	1224	4	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0009	1224	3	1	0	1	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0010	1224	3	3	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0011	1224	2	1	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0012	1224	2	0	1	0	1	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0013	1224	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0014	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0015	1224	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0016	1224	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0017	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0018	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0019	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0020	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0021	1224	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0022	1224	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0023	1224	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0024	1224	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0025	1224	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	a0026	1224	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHML_chr1_241623851_241645369	1/1	a0001	656	431	88	68	213	16	44	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0002	656	6	6	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0003	656	5	1	2	0	0	2	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0004	656	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0005	656	2	2	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0006	656	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0007	656	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0008	656	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0009	646	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	a0010	656	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHMP1A_chr16_89639435_89662708	1/1	a0001	196	390	94	76	158	12	48	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	a0002	196	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	a0003	196	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1B_chr18_11846413_11859444	1/1	a0001	199	438	100	76	198	16	46	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP2A_chr19_58546566_58560105	1/1	a0001	222	418	96	70	195	18	37	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	a0002	222	1	0	0	1	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	a0003	222	1	0	0	0	0	1	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2B_chr3_87222309_87260556	1/1	a0001	213	407	82	71	194	14	44	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	a0002	213	7	6	1	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP3_chr2_86498430_86568443	1/1	a0001	222	336	88	70	130	14	32	copy fasta	CHMP3	chr2	86498430	86568443
CHMP4A_chr14_24204615_24218488	1/1	a0001	222	296	75	30	151	10	28	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0002	222	115	16	42	39	6	12	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0003	222	3	3	0	0	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0004	222	1	0	0	1	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0005	222	1	0	0	0	0	1	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0006	135	1	0	0	0	0	1	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	a0007	196	1	0	0	1	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4B_chr20_33806348_33859366	1/1	a0001	224	332	90	66	126	10	38	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4C_chr8_81727448_81764515	1/0	a0001	233	391	93	65	181	13	38	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/1	a0002	233	14	1	5	0	1	6	copy fasta	CHMP4C	chr8	81727448	81764515