JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHMP4C_chr8_81727448_81764515	0/0	a0003	233	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	a0004	233	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	a0005	233	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP5_chr9_33260049_33287070	1/1	a0001	219	328	86	54	154	6	26	copy fasta	CHMP5	chr9	33260049	33287070
CHMP6_chr17_80986841_81005133	1/1	a0001	201	424	85	78	199	18	42	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	a0002	201	9	7	2	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	a0003	201	5	0	0	5	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP7_chr8_23238637_23266999	1/1	a0001	453	429	94	78	189	16	50	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0002	453	4	0	0	4	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0003	453	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0004	453	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0005	453	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0006	453	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	a0007	453	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHM_chrX_85856180_86052558	1/1	a0001	653	236	64	38	93	13	26	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0002	653	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0003	653	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0004	653	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0005	653	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0006	633	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0007	195	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	a0008	653	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHN1_chr2_174793809_175010381	1/1	a0001	459	275	84	30	122	10	27	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	a0002	459	1	0	0	0	0	1	copy fasta	CHN1	chr2	174793809	175010381
CHN2_chr7_29189775_29519328	1/1	a0001	468	197	60	44	57	8	26	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	a0002	468	32	11	6	15	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	a0003	468	3	3	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHODL_chr21_18239833_18272370	1/1	a0001	273	398	96	74	171	16	39	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	a0002	273	1	0	0	1	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	a0003	273	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	a0004	273	1	0	0	0	0	1	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	a0005	273	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHORDC1_chr11_90195429_90228049	0/0	a0001	332	264	37	48	130	10	39	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	1/1	a0002	332	148	53	24	56	4	9	copy fasta	CHORDC1	chr11	90195429	90228049
CHP1_chr15_41226268_41286887	1/1	a0001	195	298	96	50	102	10	38	copy fasta	CHP1	chr15	41226268	41286887
CHP2_chr16_23750026_23763935	1/1	a0001	196	376	84	82	147	17	44	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	a0002	196	9	9	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	a0003	196	4	0	0	4	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	a0004	196	1	1	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	a0005	196	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	a0006	196	1	0	0	0	1	0	copy fasta	CHP2	chr16	23750026	23763935
CHPF2_chr7_151227483_151243822	1/1	a0001	772	341	81	65	137	13	43	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0002	772	17	1	6	7	2	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0003	772	6	6	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0004	772	3	3	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0005	772	3	0	0	3	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0006	772	2	0	0	0	1	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0007	772	2	2	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0008	772	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0009	772	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822