JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHPF2_chr7_151227483_151243822	0/0	a0010	772	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0011	772	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0012	772	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0013	772	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0014	772	1	0	0	0	0	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	a0015	772	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF_chr2_219533954_219548809	0/1	a0001	775	356	82	72	149	14	38	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	1/0	a0002	775	28	8	3	16	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0003	775	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0004	775	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0005	775	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0006	775	1	0	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0007	775	1	0	0	0	0	1	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0008	775	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0009	775	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0010	775	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	a0011	775	1	0	0	0	0	1	copy fasta	CHPF	chr2	219533954	219548809
CHPT1_chr12_101692640_101734074	1/1	a0001	406	282	82	46	119	10	23	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	a0002	406	105	6	20	64	4	11	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	a0003	406	9	0	1	8	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	a0004	406	3	0	3	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	a0005	406	2	2	0	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	a0006	406	1	0	0	1	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHRAC1_chr8_140506322_140522154	1/1	a0001	131	390	89	71	166	15	47	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0002	131	26	1	5	18	1	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0003	131	3	3	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0004	131	2	2	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0005	131	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0006	131	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	a0007	131	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRDL1_chrX_110668856_110800817	1/1	a0001	458	164	50	24	65	7	16	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	a0002	458	4	4	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	a0003	458	3	3	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	a0004	458	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL2_chr11_74691429_74736426	1/1	a0001	429	370	93	57	158	14	46	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0002	127	9	0	0	9	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0003	429	5	5	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0004	429	2	0	0	0	0	2	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0005	429	1	0	1	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0006	429	1	0	0	0	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0007	429	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0008	396	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0009	429	1	0	0	0	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	a0010	429	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRD_chr3_184375054_184394829	1/1	a0001	955	263	51	43	120	15	32	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0002	955	125	22	37	56	0	10	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0003	955	10	10	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0004	955	8	7	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0005	955	8	7	0	0	1	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0006	955	2	0	0	2	0	0	copy fasta	CHRD	chr3	184375054	184394829