JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHRD_chr3_184375054_184394829	0/0	a0007	955	2	0	0	0	0	2	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0008	955	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0009	955	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0010	955	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0011	955	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0012	955	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0013	955	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0014	955	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0015	955	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0016	955	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	a0017	955	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRFAM7A_chr15_30355566_30398540	0/0	a0001	115	53	2	12	29	1	9	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/1	a0002	412	46	25	6	3	2	9	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0003	412	12	0	5	0	3	4	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0004	412	11	0	5	6	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0005	412	8	7	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0006	412	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0007	412	1	0	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	a0008	412	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRM1_chr11_62903679_62926363	1/1	a0001	460	403	86	71	192	16	36	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	a0002	248	15	1	3	9	0	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	a0003	460	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	a0004	460	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM2_chr7_136863652_137025213	1/1	a0001	466	314	79	60	121	8	44	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	a0002	466	2	0	0	2	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	a0003	466	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	a0004	466	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	a0005	466	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	a0006	466	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM3_chr1_239381568_239920450	1/1	a0001	590	113	45	25	21	6	14	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	a0002	590	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	a0003	590	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	a0004	590	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM4_chr11_46378789_46396776	1/1	a0001	479	308	98	56	108	10	34	copy fasta	CHRM4	chr11	46378789	46396776
CHRM5_chr15_33963497_34072458	1/1	a0001	532	325	81	52	142	10	38	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0002	532	5	5	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0003	532	3	3	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0004	532	2	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0005	532	1	0	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0006	532	1	0	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	a0007	532	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRNA10_chr11_3660587_3676384	1/1	a0001	450	426	87	66	208	16	47	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0002	450	6	0	3	0	2	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0003	450	3	3	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0004	450	3	0	0	3	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0005	450	3	2	1	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0006	450	2	2	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0007	450	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0008	450	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0009	450	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384