JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHRNA10_chr11_3660587_3676384	0/0	a0010	450	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0011	450	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0012	450	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	a0013	450	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA1_chr2_174742592_174769472	1/1	a0001	457	351	78	57	150	18	46	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0002	457	8	8	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0003	457	3	3	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0004	457	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0005	457	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0006	457	1	0	0	1	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0007	457	1	0	0	1	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0008	457	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0009	457	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	a0010	457	1	0	1	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA2_chr8_27454756_27484261	0/0	a0001	529	173	62	40	48	5	18	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	1/1	a0002	529	155	13	34	67	12	27	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0003	529	125	18	12	91	1	3	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0004	529	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0005	529	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0006	529	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0007	529	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	a0008	529	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA3_chr15_78590309_78625996	0/1	a0001	504	312	73	52	155	8	23	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	1/0	a0002	505	84	16	14	32	4	17	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0003	506	8	0	2	6	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0004	505	2	0	2	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0005	505	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0006	505	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0007	504	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	a0008	504	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA4_chr20_63338223_63366349	0/0	a0000	0	7	2	1	2	0	2	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	1/1	a0001	627	158	46	33	41	8	28	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	a0002	627	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	a0003	627	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	a0004	623	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA5_chr15_78560520_78600269	1/0	a0001	468	292	78	58	123	6	26	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0002	468	48	0	0	48	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/1	a0003	468	34	3	14	5	5	6	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0004	468	3	1	0	0	1	1	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0005	468	2	2	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0006	468	1	0	0	0	0	1	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0007	468	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	a0008	468	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA6_chr8_42747620_42773786	1/1	a0001	494	345	96	68	136	8	35	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	a0002	494	2	0	0	2	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	a0003	494	1	0	0	0	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	a0004	494	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	a0005	494	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA7_chr15_32025515_32178018	0/1	a0001	502	304	79	64	126	8	26	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	a0002	502	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018