JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHRNA7_chr15_32025515_32178018	0/0	a0003	502	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA9_chr4_40330333_40360217	0/1	a0001	479	281	53	52	126	13	36	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0002	479	70	7	11	43	2	7	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	1/0	a0003	479	32	16	14	0	1	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0004	479	13	12	1	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0005	479	11	0	0	11	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0006	479	6	6	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0007	479	4	4	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	a0008	479	3	0	0	0	0	3	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNB1_chr17_7440061_7462710	1/0	a0001	501	332	92	53	147	6	33	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/1	a0002	501	27	1	17	0	4	4	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	a0003	501	4	0	0	4	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	a0004	501	3	3	0	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	a0005	501	1	0	0	0	0	1	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	a0006	501	1	0	0	1	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB2_chr1_154562778_154585013	1/1	a0001	502	421	89	82	184	16	48	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	a0002	502	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	a0003	502	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	a0004	502	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB3_chr8_42692366_42742407	1/1	a0001	458	272	87	54	91	8	30	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	a0002	458	9	9	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	a0003	458	1	0	0	1	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB4_chr15_78619111_78646210	1/1	a0001	498	386	78	71	186	15	34	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0002	498	15	1	0	12	1	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0003	498	6	6	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0004	498	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0005	498	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0006	498	1	0	0	0	0	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0007	498	1	0	1	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0008	498	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0009	498	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	a0010	498	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRND_chr2_232521160_232541664	1/1	a0001	517	420	95	59	201	18	45	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0002	517	4	0	0	4	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0003	517	3	0	0	3	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0004	517	3	0	2	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0005	233	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0006	517	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0007	517	1	1	0	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0008	517	1	0	0	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0009	517	1	0	0	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0010	517	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0011	517	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	a0012	517	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRNE_chr17_4892771_4908098	1/1	a0001	493	428	93	67	209	14	43	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	a0002	493	12	1	11	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	a0003	493	2	0	0	0	2	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	a0004	493	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	a0005	493	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	a0006	493	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098