JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHRNE_chr17_4892771_4908098	0/0	a0007	493	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNG_chr2_232534692_232553115	1/1	a0001	517	381	90	61	163	17	48	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0002	517	43	4	2	35	1	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0003	517	2	0	0	2	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0004	517	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0005	517	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0006	517	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0007	517	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0008	517	1	0	0	0	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0009	517	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0010	517	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	a0011	517	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHST10_chr2_100386860_100422668	1/1	a0001	356	345	78	69	142	14	40	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0002	356	9	9	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0003	356	5	5	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0004	356	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0005	356	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0006	356	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	a0007	356	1	0	1	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST11_chr12_104451948_104767014	1/1	a0001	352	239	74	46	74	10	33	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	a0002	352	1	0	0	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST12_chr7_2398611_2453484	1/1	a0001	414	238	77	57	59	12	31	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0002	414	39	1	4	27	0	7	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0003	414	33	0	6	27	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0004	414	18	1	4	12	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0005	414	8	8	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0006	414	3	2	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0007	414	2	0	0	1	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0008	414	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0009	414	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	a0010	414	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST13_chr3_126519155_126548291	1/0	a0001	341	185	36	43	76	8	21	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/1	a0002	341	73	3	17	45	5	2	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0003	341	56	38	11	0	1	6	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0004	341	30	5	3	16	2	4	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0005	341	8	7	1	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0006	341	6	6	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0007	341	4	0	3	1	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0008	341	1	0	0	0	0	1	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	a0009	341	1	1	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST14_chr15_40465984_40478158	1/1	a0001	376	409	96	68	180	18	45	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	a0002	376	1	0	0	0	0	1	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	a0003	376	1	0	1	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	a0004	376	1	0	1	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST15_chr10_124002668_124098598	1/1	a0001	561	379	89	78	149	16	45	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	a0002	561	4	4	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	a0003	561	3	3	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	a0004	561	3	0	2	0	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	a0005	561	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	a0006	561	1	0	0	1	0	0	copy fasta	CHST15	chr10	124002668	124098598