JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHST15_chr10_124002668_124098598	0/0	a0007	561	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST1_chr11_45642689_45670622	1/1	a0001	411	384	94	63	171	16	38	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	a0002	411	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	a0003	411	1	0	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST2_chr3_143114771_143129014	1/1	a0001	530	458	97	72	225	18	44	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0002	530	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0003	530	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0004	540	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0005	530	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0006	530	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	a0007	530	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST3_chr10_71959395_72018558	1/1	a0001	479	284	73	37	136	5	31	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	a0002	479	84	19	25	20	5	15	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	a0003	479	2	0	0	2	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	a0004	479	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	a0005	479	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST4_chr16_71521426_71543748	1/1	a0001	386	405	92	74	182	14	41	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0002	386	2	0	0	0	0	2	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0003	386	2	0	0	2	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0004	386	2	2	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0005	386	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0006	386	1	0	0	0	0	1	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0007	386	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0008	280	1	0	1	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0009	386	1	0	1	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0010	386	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	a0011	386	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST5_chr16_75523530_75541108	0/0	a0000	0	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	1/0	a0001	411	301	69	71	109	12	39	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/1	a0002	411	71	11	13	36	4	6	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0003	411	7	0	0	7	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0004	411	6	6	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0005	411	3	3	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0006	411	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0007	411	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0008	411	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	a0009	411	1	0	0	0	0	1	copy fasta	CHST5	chr16	75523530	75541108
CHST6_chr16_75467052_75500441	1/0	a0001	395	357	93	61	148	15	39	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0002	395	8	1	5	0	2	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0003	395	2	0	0	2	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0004	395	1	0	0	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0005	395	1	0	0	0	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0006	395	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	a0007	395	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST7_chrX_46568765_46603496	1/1	a0001	486	308	68	57	140	13	28	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	a0002	264	1	0	0	1	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	a0003	375	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	a0004	486	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST8_chr19_33616953_33778506	1/1	a0001	424	250	88	55	61	15	29	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	a0002	424	1	0	0	0	0	1	copy fasta	CHST8	chr19	33616953	33778506