JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHST8_chr19_33616953_33778506	0/0	a0003	424	1	0	0	0	1	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	a0004	424	1	0	1	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	a0005	424	1	0	0	1	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST9_chr18_26901481_27190308	1/1	a0001	443	260	74	52	92	8	32	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	a0002	443	2	0	2	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHSY1_chr15_101170727_101257048	1/0	a0001	802	288	78	55	121	14	19	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0002	802	83	10	7	61	1	4	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0003	802	22	0	4	16	0	2	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/1	a0004	802	13	0	8	0	3	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0005	802	12	0	3	0	0	9	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0006	802	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0007	802	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0008	802	1	0	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	a0009	802	1	0	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY3_chr5_129899465_130191634	0/0	a0001	882	142	21	33	68	8	12	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0002	882	67	38	8	16	2	3	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0003	882	48	20	6	17	0	5	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0004	882	6	6	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0005	882	5	0	0	5	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0006	882	3	3	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0007	882	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0008	882	1	0	0	1	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0009	882	1	0	0	1	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0010	882	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	a0011	882	1	0	1	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHTF18_chr16_783620_803074	1/0	a0001	975	149	14	43	61	12	18	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/1	a0002	975	67	0	7	49	4	6	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0003	975	55	11	6	37	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0004	975	21	8	5	3	0	5	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0005	975	18	13	1	0	1	3	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0006	975	14	0	1	8	0	5	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0007	975	8	7	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0008	975	8	0	8	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0009	975	8	8	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0010	975	6	0	0	6	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0011	975	5	3	2	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0012	975	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0013	975	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0014	975	3	0	1	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0015	975	3	0	1	0	0	2	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0016	975	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0017	975	3	0	3	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0018	975	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0019	975	3	0	0	3	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0020	975	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0021	975	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0022	975	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0023	975	2	0	0	0	1	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0024	975	2	0	0	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0025	975	2	0	1	0	0	1	copy fasta	CHTF18	chr16	783620	803074