JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHTF18_chr16_783620_803074	0/0	a0026	975	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0027	975	2	0	0	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0028	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0029	615	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0030	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0031	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0032	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0033	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0034	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0035	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0036	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0037	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0038	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0039	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0040	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0041	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0042	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0043	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0044	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0045	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0046	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0047	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0048	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0049	975	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0050	975	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0051	975	1	0	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0052	975	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	a0053	975	1	0	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF8_chr16_69113010_69137588	1/1	a0001	121	363	94	74	131	16	46	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	a0002	121	1	0	0	1	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTOP_chr1_153629066_153651306	1/1	a0001	248	372	96	68	148	12	46	copy fasta	CHTOP	chr1	153629066	153651306
CHUK_chr10_100183300_100234596	0/1	a0001	745	199	69	34	84	4	7	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	1/0	a0002	745	179	21	38	86	6	27	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0003	745	19	0	0	16	0	3	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0004	745	1	1	0	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0005	745	1	1	0	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0006	745	1	0	0	1	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0007	745	1	0	0	1	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	a0008	745	1	0	0	0	0	1	copy fasta	CHUK	chr10	100183300	100234596
CHURC1_chr14_64909455_64940368	1/1	a0001	112	389	92	62	176	13	44	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	a0002	112	2	2	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	a0003	112	1	0	0	0	1	0	copy fasta	CHURC1	chr14	64909455	64940368
CIAO1_chr2_96261225_96279173	1/1	a0001	339	397	86	68	191	10	40	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	a0002	339	2	0	0	0	0	2	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	a0003	339	2	0	0	2	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	a0004	339	2	2	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	a0005	339	1	0	0	1	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO2A_chr15_64067565_64098838	1/1	a0001	160	338	98	58	132	14	34	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2B_chr16_66927065_66939402	1/1	a0001	163	393	98	60	175	14	44	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO2B_chr16_66927065_66939402	0/0	a0002	163	2	0	0	2	0	0	copy fasta	CIAO2B	chr16	66927065	66939402