Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAM8_chr10_133257423_133281868	0/0	a0017	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0018	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0019	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0020	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0021	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0022	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0023	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0024	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0025	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0026	824	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0027	824	1	0	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0028	382	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0029	824	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	a0030	824	1	0	0	0	1	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM9_chr8_38991973_39110261	1/1	a0001	819	313	71	59	129	10	42	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	a0002	819	14	14	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	a0003	819	2	0	0	2	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	a0004	819	1	1	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	a0005	819	1	0	0	1	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	a0006	819	1	0	1	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAMDEC1_chr8_24379285_24411013	1/0	a0001	470	281	68	42	139	8	23	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/1	a0002	470	107	8	27	51	8	12	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0003	470	6	6	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0004	470	3	1	2	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0005	470	2	2	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0006	470	1	0	0	0	0	1	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0007	470	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0008	470	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0009	470	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	a0010	470	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMTS10_chr19_8575240_8615715	0/1	a0001	1103	322	74	50	140	9	48	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0002	1103	25	1	15	2	5	2	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0003	1103	10	0	7	3	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0004	1103	7	7	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0005	1103	6	0	4	0	2	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0006	1103	5	2	0	3	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0007	1103	2	2	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0008	1103	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0009	1103	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0010	1103	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	1/0	a0011	1103	1	0	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0012	1103	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0013	1103	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	a0014	1103	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS12_chr5_33518535_33896990	0/0	a0001	1594	107	31	18	46	3	9	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	1/1	a0002	1594	54	9	11	23	3	6	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	a0003	1594	10	10	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	a0004	1594	8	7	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	a0005	1594	7	1	2	3	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	a0006	1594	4	0	0	2	0	2	copy fasta	ADAMTS12	chr5	33518535	33896990