JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIAO2B_chr16_66927065_66939402	0/0	a0003	163	1	0	0	1	0	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO3_chr16_724765_745997	1/1	a0001	476	368	78	75	151	14	48	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0002	476	13	12	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0003	476	8	7	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0004	476	2	0	0	2	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0005	476	2	0	0	2	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0006	476	2	2	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0007	476	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0008	476	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	a0009	476	1	0	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAPIN1_chr16_57423187_57452385	1/1	a0001	312	375	86	60	175	8	44	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	a0002	312	8	0	4	0	2	2	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	a0003	312	4	4	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	a0004	312	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	a0005	262	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	a0006	312	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIART_chr1_150277554_150292093	1/1	a0001	385	406	92	68	182	16	46	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	a0002	385	7	0	0	7	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	a0003	385	2	0	2	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	a0004	385	1	0	0	1	0	0	copy fasta	CIART	chr1	150277554	150292093
CIB1_chr15_90224975_90238941	1/1	a0001	191	448	90	85	217	14	40	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0002	191	5	0	0	5	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0003	191	2	0	0	0	0	2	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0004	191	1	0	1	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0005	191	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0006	150	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0007	191	1	1	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	a0008	191	1	1	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB2_chr15_78099606_78136445	1/1	a0001	187	385	87	76	164	14	42	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	a0002	187	5	3	0	0	0	2	copy fasta	CIB2	chr15	78099606	78136445
CIB3_chr19_16156368_16178525	0/0	a0001	187	294	59	54	140	13	28	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	1/1	a0002	187	67	21	13	18	1	12	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	a0003	187	14	13	1	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	a0004	187	2	0	2	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	a0005	187	1	1	0	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB4_chr2_26576205_26646366	0/1	a0001	185	204	50	34	95	3	21	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	1/0	a0002	185	138	42	31	44	9	11	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	a0003	185	1	0	1	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	a0004	67	1	0	0	1	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIBAR1_chr8_93695550_93736527	1/1	a0001	289	334	71	64	152	10	35	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	a0002	288	20	19	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	a0003	289	17	4	7	0	4	2	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	a0004	289	2	2	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	a0005	289	1	0	0	0	0	1	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR2_chr16_85093358_85117472	1/1	a0001	304	424	82	79	199	13	49	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	a0002	304	5	4	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	a0003	304	3	3	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	a0004	304	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	a0005	304	1	0	0	0	0	1	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	a0006	304	1	0	1	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472