JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIBAR2_chr16_85093358_85117472	0/0	a0007	304	1	0	0	0	1	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIC_chr19_42264252_42300796	1/1	a0001	2517	179	53	48	41	6	29	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0002	2517	4	4	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0003	2517	2	0	0	2	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0004	2517	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0005	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0006	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0007	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0008	2517	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0009	2517	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0010	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0011	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0012	2517	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0013	2517	1	0	0	1	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	a0014	2517	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIDEA_chr18_12249361_12282595	1/1	a0001	219	262	80	47	87	14	32	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	a0002	219	177	18	32	113	2	12	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	a0003	219	6	0	6	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	a0004	219	1	1	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	a0005	219	1	1	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	a0006	219	1	0	1	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEB_chr14_24300187_24312977	1/1	a0001	219	409	90	66	190	15	46	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	a0002	219	1	0	0	0	0	1	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	a0003	219	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	a0004	219	1	0	0	0	1	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	a0005	219	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	a0006	219	1	0	0	0	0	1	copy fasta	CIDEB	chr14	24300187	24312977
CIDEC_chr3_9861714_9885253	1/0	a0001	238	390	88	72	165	18	46	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	a0002	238	8	5	1	0	0	2	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/1	a0003	238	5	0	4	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	a0004	238	5	0	0	5	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	a0005	238	1	0	1	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	a0006	238	1	1	0	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIITA_chr16_10872202_10941394	0/0	a0001	1130	181	30	36	82	7	26	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/1	a0002	1130	74	22	11	33	0	7	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0003	1130	41	3	6	30	0	2	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0004	1130	23	0	8	15	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	1/0	a0005	1130	21	19	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0006	1130	14	0	0	14	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0007	1130	8	0	0	7	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0008	1130	7	2	2	0	2	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0009	1130	4	4	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0010	1130	2	1	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0011	1130	2	2	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0012	1130	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0013	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0014	1130	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0015	1130	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0016	1130	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0017	1130	1	0	0	0	1	0	copy fasta	CIITA	chr16	10872202	10941394