JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	a0018	1130	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0019	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0020	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0021	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0022	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0023	1130	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0024	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0025	1130	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	a0026	1130	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CILK1_chr6_52996303_53066824	1/1	a0001	632	227	67	34	102	6	16	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	a0002	632	15	5	6	0	2	2	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	a0003	632	2	2	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILP2_chr19_19533265_19551659	1/1	a0001	1156	334	90	64	117	17	44	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0002	1156	2	2	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0003	1156	2	0	0	2	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0004	1156	2	0	0	2	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0005	1156	2	0	0	0	0	2	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0006	1156	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0007	1156	1	0	0	0	1	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0008	1156	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0009	1156	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0010	1156	1	0	0	0	0	1	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0011	1156	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0012	1156	1	1	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0013	1156	1	1	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0014	1156	1	0	0	0	0	1	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	a0015	1156	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP_chr15_65189760_65216473	0/1	a0001	1184	153	19	19	87	6	21	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0002	1184	120	33	39	28	8	12	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0003	1184	36	21	11	1	0	3	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0004	1184	14	11	2	0	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0005	1184	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0006	1184	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0007	1184	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0008	1184	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0009	1184	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0010	1184	1	0	0	0	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	1/0	a0011	1184	1	0	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0012	1184	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	a0013	1184	1	0	1	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CINP_chr14_102343282_102367890	1/1	a0001	212	335	78	60	155	11	29	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	a0002	212	78	11	19	32	6	10	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	a0003	212	3	0	1	0	1	1	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	a0004	212	2	0	2	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	a0005	212	1	0	0	1	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	a0006	212	1	1	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CIP2A_chr3_108544864_108594438	1/1	a0001	905	237	57	52	77	12	37	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0002	905	91	5	17	65	0	4	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0003	905	10	9	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0004	905	8	7	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438