JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIP2A_chr3_108544864_108594438	0/0	a0005	905	5	4	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0006	905	5	5	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0007	905	3	0	3	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0008	905	2	0	0	0	0	2	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0009	905	2	2	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0010	905	2	2	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0011	905	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0012	905	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0013	905	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0014	905	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0015	905	1	0	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0016	905	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	a0017	905	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIPC_chr14_77093258_77122287	1/1	a0001	399	401	79	77	187	14	42	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	a0002	399	16	15	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	a0003	399	7	0	0	7	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	a0004	310	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	a0005	399	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIR1_chr2_174343022_174400712	1/1	a0001	450	325	70	62	131	14	46	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0002	450	16	15	1	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0003	450	2	0	0	2	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0004	450	2	2	0	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0005	450	1	1	0	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0006	450	1	0	0	1	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	a0007	450	1	0	1	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIRBP_chr19_1264332_1279810	1/1	a0001	297	273	84	70	66	16	35	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	a0002	297	5	5	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	a0003	297	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	a0004	297	1	0	0	0	0	1	copy fasta	CIRBP	chr19	1264332	1279810
CIROP_chr14_23094062_23109989	0/0	a0001	787	133	11	31	69	4	18	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/1	a0002	788	71	2	10	52	1	5	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0003	788	34	10	1	16	1	6	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0004	787	30	3	4	23	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0005	787	26	2	3	21	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0006	787	26	1	6	9	0	10	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0007	783	21	18	0	0	0	3	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0008	787	16	1	10	0	1	4	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0009	788	11	9	1	0	0	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0010	787	7	7	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0011	787	7	0	4	3	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	1/0	a0012	788	6	5	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0013	788	5	4	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0014	788	5	0	0	4	1	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0015	783	5	0	0	5	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0016	788	4	4	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0017	783	4	4	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0018	788	3	3	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0019	783	3	2	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0020	787	3	0	0	3	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0021	787	3	0	0	3	0	0	copy fasta	CIROP	chr14	23094062	23109989