JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIROP_chr14_23094062_23109989	0/0	a0022	788	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0023	788	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0024	787	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0025	787	2	0	0	1	0	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0026	787	2	0	1	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0027	787	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0028	783	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0029	783	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0030	788	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0031	788	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0032	788	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0033	788	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0034	788	1	0	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0035	788	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0036	783	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0037	783	1	0	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0038	787	1	0	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	a0039	787	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CISD1_chr10_58264162_58294586	1/1	a0001	108	386	92	68	170	8	46	copy fasta	CISD1	chr10	58264162	58294586
CISD2_chr4_102863992_102897807	1/1	a0001	135	354	90	56	152	14	40	copy fasta	CISD2	chr4	102863992	102897807
CISD3_chr17_38725341_38740605	0/1	a0001	127	338	78	56	157	12	34	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	a0002	127	65	5	19	35	0	6	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	a0003	127	8	7	1	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISH_chr3_50601489_50616774	1/1	a0001	258	352	76	55	167	12	40	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	a0002	258	4	0	0	4	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	a0003	258	2	0	0	2	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	a0004	258	1	0	1	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	a0005	258	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CITED1_chrX_72296646_72310914	0/1	a0001	193	228	74	39	76	7	31	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	1/0	a0002	193	72	0	3	67	0	1	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	a0003	49	1	0	0	1	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	a0004	100	1	0	0	1	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED2_chr6_139366807_139379648	1/1	a0001	270	317	94	71	96	16	38	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	a0002	268	3	3	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	a0003	270	1	0	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	a0004	261	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED4_chr1_40856054_40867363	1/1	a0001	184	248	60	34	99	13	40	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0002	184	161	16	29	109	0	7	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0003	184	15	9	5	0	1	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0004	184	8	5	3	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0005	184	3	0	1	2	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0006	184	2	0	0	0	2	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0007	184	2	0	0	2	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	a0008	184	1	0	0	0	0	1	copy fasta	CITED4	chr1	40856054	40867363
CIT_chr12_119680791_119882320	1/1	a0001	2069	210	63	29	88	6	22	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0002	2069	15	13	2	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0003	2069	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0004	2069	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0005	2069	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0006	2069	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320