JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLCA2_chr1_86419171_86461553	0/0	a0006	943	2	0	1	0	1	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0007	943	2	0	0	2	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0008	943	2	0	0	0	0	2	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0009	943	1	0	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0010	943	1	0	0	0	0	1	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0011	943	1	0	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA4_chr1_86542078_86585754	0/0	a0001	917	191	43	34	76	11	27	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	1/1	a0002	919	53	16	16	10	3	6	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0003	919	51	6	0	45	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0004	917	17	17	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0005	917	10	8	0	1	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0006	921	4	1	2	0	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0007	917	2	0	0	2	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0008	917	2	0	0	2	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0009	919	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0010	915	1	1	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0011	917	1	0	0	0	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	a0012	917	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCC1_chr1_108924505_108968484	1/1	a0001	551	289	39	58	151	12	27	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	a0002	551	96	57	10	10	6	13	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	a0003	551	3	3	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	a0004	551	3	0	0	3	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	a0005	551	2	0	2	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	a0006	551	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCF1_chr11_67359168_67378598	1/1	a0001	225	302	89	55	116	6	34	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	a0002	225	2	1	1	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	a0003	225	1	0	0	0	1	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	a0004	225	1	0	0	0	1	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	a0005	225	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	a0006	225	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCN1_chr7_143311111_143357083	0/1	a0001	988	268	58	54	114	15	26	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0002	988	122	33	21	49	3	16	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0003	988	8	0	0	8	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0004	988	3	3	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0005	988	3	3	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0006	988	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	1/0	a0007	988	1	0	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0008	988	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0009	988	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0010	988	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0011	988	1	0	1	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0012	988	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0013	988	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0014	988	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	a0015	988	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN2_chr3_184341185_184366605	1/0	a0001	898	295	30	37	196	6	25	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/1	a0002	898	141	64	29	13	12	22	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0003	898	4	1	3	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0004	899	4	0	4	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0005	898	3	0	0	3	0	0	copy fasta	CLCN2	chr3	184341185	184366605