JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLCN2_chr3_184341185_184366605	0/0	a0006	898	3	3	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0007	898	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0008	898	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0009	898	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0010	898	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0011	898	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0012	898	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0013	898	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0014	898	1	0	1	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0015	898	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	a0016	898	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN3_chr4_169615578_169728673	1/1	a0001	818	287	95	50	88	16	36	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	a0002	818	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN4_chrX_10151975_10242660	1/1	a0001	760	262	72	50	97	13	28	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	a0002	111	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	a0003	759	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN5_chrX_49917596_50104230	1/1	a0001	816	173	58	25	67	5	16	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	a0002	816	1	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	a0003	816	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN6_chr1_11801191_11848130	0/1	a0001	869	280	88	52	90	10	39	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0002	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	1/0	a0003	869	1	0	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0004	869	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0005	869	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0006	869	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0007	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0008	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0009	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0010	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	a0011	869	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN7_chr16_1439935_1480028	1/1	a0001	805	363	74	62	162	15	48	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0002	805	30	18	10	0	1	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0003	802	5	2	2	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0004	805	2	2	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0005	254	2	0	1	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0006	805	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	a0007	805	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCNKA_chr1_16017036_16039050	0/0	a0001	687	170	54	23	76	2	15	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	1/1	a0002	687	82	16	39	0	8	17	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0003	687	61	3	7	48	1	2	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0004	687	25	4	1	12	2	6	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0005	687	14	6	5	2	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0006	687	11	2	0	9	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0007	687	4	0	1	0	2	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0008	687	3	3	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0009	687	3	0	0	3	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0010	687	2	0	0	0	1	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0011	687	2	0	0	2	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0012	687	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0013	687	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050