JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLCNKA_chr1_16017036_16039050	0/0	a0014	687	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0015	687	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0016	687	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0017	687	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0018	687	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0019	637	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0020	687	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0021	687	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0022	687	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0023	687	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	a0024	687	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKB_chr1_16038782_16062308	0/0	a0001	687	158	8	21	108	4	17	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0002	687	45	11	7	24	0	3	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0003	687	44	4	5	28	1	6	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/1	a0004	687	38	0	20	0	7	10	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0005	687	22	7	6	0	3	6	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0006	687	22	11	7	2	0	2	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0007	687	13	10	3	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0008	687	12	0	2	9	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0009	687	11	8	3	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0010	687	10	0	4	0	3	3	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0011	687	7	2	0	5	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0012	687	6	0	6	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0013	687	4	3	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0014	687	4	4	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0015	687	3	3	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0016	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0017	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0018	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0019	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0020	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	1/0	a0021	687	2	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0022	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0023	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0024	687	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0025	687	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0026	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0027	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0028	687	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0029	29	1	0	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0030	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0031	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0032	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0033	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0034	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	a0035	687	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLC_chr19_39726255_39743029	0/1	a0001	142	224	73	38	83	11	18	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	1/0	a0002	142	200	24	32	118	7	18	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	a0003	142	11	0	10	1	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	a0004	142	3	0	0	3	0	0	copy fasta	CLC	chr19	39726255	39743029