JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLC_chr19_39726255_39743029	0/0	a0005	142	3	3	0	0	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	a0006	142	1	0	0	1	0	0	copy fasta	CLC	chr19	39726255	39743029
CLDN10_chr13_95547720_95584759	1/1	a0001	228	400	88	66	188	16	40	copy fasta	CLDN10	chr13	95547720	95584759
CLDN11_chr3_170413868_170439691	1/1	a0001	207	407	100	73	184	10	38	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	a0002	207	1	0	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN12_chr7_90398461_90420954	1/1	a0001	244	414	96	78	180	14	44	copy fasta	CLDN12	chr7	90398461	90420954
CLDN14_chr21_36455621_36485122	1/1	a0001	239	406	92	69	184	13	46	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	a0002	239	15	8	5	1	1	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	a0003	239	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	a0004	239	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	a0005	239	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN15_chr7_101227094_101242802	1/1	a0001	228	401	94	58	185	16	46	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	a0002	228	1	0	0	1	0	0	copy fasta	CLDN15	chr7	101227094	101242802
CLDN16_chr3_190383163_190417138	1/1	a0001	235	431	90	74	200	17	48	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	a0002	235	4	3	1	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	a0003	235	2	1	1	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	a0004	235	1	0	0	0	1	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN17_chr21_30160565_30171805	1/1	a0001	224	376	89	66	162	16	41	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0002	224	50	0	8	37	2	3	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0003	224	3	3	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0004	224	2	0	0	2	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0005	224	2	0	0	2	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0006	224	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0007	224	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	a0008	224	1	0	0	1	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN18_chr3_138005165_138038649	1/1	a0001	261	366	86	66	160	15	37	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	a0002	261	22	6	5	5	3	3	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	a0003	261	3	0	3	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	a0004	261	2	0	2	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	a0005	261	1	0	0	1	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN19_chr1_42728093_42745236	1/1	a0001	224	413	90	67	195	17	42	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	a0002	224	7	0	5	0	0	2	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	a0003	224	5	5	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	a0004	224	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	a0005	224	1	0	0	1	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	a0006	224	1	0	0	0	1	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN1_chr3_190300707_190327446	1/1	a0001	211	468	98	88	212	18	50	copy fasta	CLDN1	chr3	190300707	190327446
CLDN20_chr6_155259013_155281548	1/1	a0001	219	377	88	74	159	14	40	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	a0002	219	3	3	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	a0003	219	2	2	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	a0004	219	1	1	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	a0005	8	1	0	0	1	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN22_chr4_183313100_183325276	1/1	a0001	220	431	85	80	204	18	42	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	a0002	220	11	9	2	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	a0003	220	2	2	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	a0004	220	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	a0005	220	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN23_chr8_8696937_8709096	1/1	a0001	292	287	85	56	102	14	28	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0002	292	98	8	5	73	1	11	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0003	292	46	1	15	24	1	5	copy fasta	CLDN23	chr8	8696937	8709096