JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLDN23_chr8_8696937_8709096	0/0	a0004	292	2	0	0	0	0	2	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0005	292	2	0	2	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0006	292	1	0	0	1	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0007	292	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	a0008	292	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN24_chr4_183316764_183327426	0/0	a0001	220	178	28	46	77	7	20	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	1/0	a0002	220	153	34	22	80	4	12	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/1	a0003	220	89	18	11	45	5	9	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	a0004	220	10	9	0	0	0	1	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	a0005	220	6	6	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	a0006	220	5	0	3	0	2	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	a0007	220	4	2	2	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	a0008	220	1	1	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN25_chr11_113774796_113785485	1/1	a0001	229	432	96	78	206	10	40	copy fasta	CLDN25	chr11	113774796	113785485
CLDN25_chr11_113774796_113785485	0/0	a0002	229	2	0	0	0	0	2	copy fasta	CLDN25	chr11	113774796	113785485
CLDN2_chrX_106915402_106935861	1/1	a0001	230	252	68	49	98	9	26	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	a0002	230	2	2	0	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	a0003	230	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN34_chrX_9962358_9973352	1/1	a0001	214	310	62	57	146	13	30	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	a0002	214	10	7	3	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	a0003	214	7	7	0	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	a0004	55	2	0	0	2	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	a0005	214	1	0	0	1	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN3_chr7_73763997_73775270	1/1	a0001	220	410	94	84	172	16	42	copy fasta	CLDN3	chr7	73763997	73775270
CLDN4_chr7_73825996_73837690	0/0	a0000	0	1	0	1	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	1/1	a0001	209	366	89	71	151	14	39	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	a0002	209	1	1	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	a0003	209	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	a0004	209	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	a0005	209	1	0	0	0	0	1	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	a0006	209	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN5_chr22_19518027_19529410	1/1	a0001	218	440	95	78	209	14	42	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	a0002	147	1	0	0	1	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	a0003	218	1	1	0	0	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN6_chr16_3009712_3023183	1/1	a0001	220	281	59	58	126	6	30	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	a0002	220	136	37	25	49	10	15	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	a0003	220	3	0	1	1	1	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	a0004	220	2	0	0	0	1	1	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	a0005	220	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	a0006	220	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN7_chr17_7254903_7267478	0/0	a0001	211	293	75	43	135	11	29	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	1/1	a0002	211	118	14	33	56	4	9	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	a0003	211	2	0	1	0	1	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	a0004	211	2	0	0	0	2	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	a0005	168	1	0	0	1	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	a0006	211	1	1	0	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	a0007	211	1	0	1	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN8_chr21_30209006_30221097	1/1	a0001	225	265	25	59	128	16	35	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0002	225	151	35	17	91	2	6	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0003	225	29	18	7	1	0	3	copy fasta	CLDN8	chr21	30209006	30221097