JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLDN8_chr21_30209006_30221097	0/0	a0004	225	7	7	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0005	225	7	6	1	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0006	225	5	5	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0007	225	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	a0008	225	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN9_chr16_3007923_3019505	0/0	a0000	0	12	2	2	5	0	3	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	1/1	a0001	217	411	96	78	176	16	43	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	a0002	217	2	0	0	2	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	a0003	217	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	a0004	217	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	a0005	217	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDND1_chr3_98510483_98527902	1/1	a0001	253	434	92	78	200	16	46	copy fasta	CLDND1	chr3	98510483	98527902
CLDND2_chr19_51362098_51374003	1/1	a0001	167	390	59	83	187	16	43	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0002	167	18	16	2	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0003	167	14	13	1	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0004	167	5	0	0	5	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0005	167	5	5	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0006	167	4	4	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0007	167	2	2	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0008	167	1	1	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	a0009	167	1	0	0	0	0	1	copy fasta	CLDND2	chr19	51362098	51374003
CLEC10A_chr17_7069537_7085251	0/0	a0001	289	239	78	28	112	5	16	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	1/1	a0002	289	201	8	52	98	10	31	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0003	289	7	7	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0004	289	4	0	0	4	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0005	289	3	1	0	0	1	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0006	289	2	2	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0007	289	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	a0008	289	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC11A_chr19_50718364_50730708	1/1	a0001	323	361	97	77	129	16	40	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0002	323	4	0	0	4	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0003	323	2	0	0	2	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0004	323	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0005	323	1	0	1	0	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0006	323	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0007	323	1	0	0	0	0	1	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0008	323	1	0	0	0	0	1	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0009	323	1	1	0	0	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	a0010	323	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC12A_chr12_9966409_9990595	0/1	a0001	265	349	64	48	192	11	33	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	1/0	a0002	265	90	33	20	22	7	7	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	a0003	265	1	1	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12B_chr12_10005627_10023796	0/1	a0001	276	297	42	40	178	9	27	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	a0002	276	135	47	25	43	6	14	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	1/0	a0003	276	24	3	6	7	3	4	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	a0004	276	9	4	5	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	a0005	276	1	0	0	0	0	1	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC14A_chr14_38249000_38261093	1/1	a0001	490	393	78	72	183	14	44	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0002	490	8	8	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0003	490	4	0	0	4	0	0	copy fasta	CLEC14A	chr14	38249000	38261093