JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLEC18B_chr16_74403631_74426478	0/0	a0001	446	212	40	46	97	4	25	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	1/0	a0002	446	40	9	3	25	0	2	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0003	446	18	0	0	18	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0004	446	3	0	0	3	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0005	446	2	2	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0006	446	2	0	0	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0007	446	2	2	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0008	446	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0009	446	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0010	446	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0011	446	1	0	1	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0012	181	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0013	446	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0014	446	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	a0015	14	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18C_chr16_70168787_70191895	0/0	a0001	446	157	40	34	66	1	16	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0002	446	63	2	19	34	3	5	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	1/0	a0003	446	47	1	16	10	4	15	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0004	446	27	27	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0005	446	17	1	3	5	3	5	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0006	446	10	0	0	10	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0007	446	9	0	0	9	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0008	446	4	4	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0009	445	3	3	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0010	446	2	0	2	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0011	446	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0012	446	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0013	446	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0014	446	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0015	446	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0016	446	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0017	446	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0018	446	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0019	446	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0020	446	1	0	0	0	1	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0021	171	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0022	446	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0023	446	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0024	446	1	0	0	0	0	1	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0025	446	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	a0026	446	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC19A_chr16_19280731_19315947	1/0	a0001	186	285	90	45	111	9	29	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/1	a0002	186	130	3	21	87	3	15	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	a0003	186	8	2	6	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	a0004	186	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	a0005	186	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	a0006	186	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC1A_chr12_10064554_10103985	0/1	a0001	280	238	85	46	77	12	17	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	1/0	a0002	280	139	8	22	95	2	11	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	a0003	280	3	3	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985