JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLEC1A_chr12_10064554_10103985	0/0	a0004	280	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	a0005	280	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	a0006	280	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	a0007	280	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1B_chr12_9988075_10004121	0/0	a0001	229	282	46	42	151	10	33	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	a0002	229	113	44	25	28	7	9	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/1	a0003	229	57	3	7	41	1	4	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	a0004	229	6	0	0	6	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	1/0	a0005	229	3	2	0	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	a0006	229	1	1	0	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC20A_chr1_178474240_178501964	1/0	a0001	400	208	54	47	76	10	20	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/1	a0002	400	64	30	17	12	2	2	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0003	400	20	0	5	11	0	4	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0004	400	7	3	3	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0005	400	4	4	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0006	400	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0007	400	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0008	400	1	0	1	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0009	400	1	0	0	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0010	400	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0011	400	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0012	400	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0013	400	1	0	1	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0014	400	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0015	400	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	a0016	400	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC2A_chr12_9908227_9937370	1/0	a0001	174	215	31	23	138	3	19	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/1	a0002	174	201	51	44	67	13	25	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0003	174	9	8	1	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0004	174	2	2	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0005	174	2	2	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0006	136	2	1	1	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0007	174	2	0	1	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0008	174	1	1	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0009	174	1	0	0	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	a0010	174	1	0	0	1	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2B_chr12_9847369_9874354	1/1	a0001	149	454	98	78	210	18	48	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2D_chr12_9664713_9704553	1/1	a0001	191	193	34	38	89	4	26	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	a0002	191	131	8	22	79	5	17	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	a0003	191	55	40	12	0	2	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	a0004	191	7	6	0	0	1	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	a0005	191	2	0	0	2	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2L_chr7_139518685_139549985	1/1	a0001	214	294	88	59	100	10	35	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0002	214	5	5	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0003	214	2	1	1	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0004	214	2	0	0	0	0	2	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0005	214	2	0	2	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0006	214	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0007	214	1	0	0	0	0	1	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	a0008	214	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985