JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLEC3A_chr16_78017548_78037101	1/1	a0001	197	376	91	65	164	17	37	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	a0002	197	68	5	14	43	1	5	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	a0003	197	2	2	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	a0004	197	1	0	0	1	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	a0005	197	1	0	1	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3B_chr3_45021303_45041071	0/0	a0001	202	205	38	35	97	6	29	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	1/1	a0002	202	170	56	43	46	10	13	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	0/0	a0003	202	1	0	0	1	0	0	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC4A_chr12_8118617_8143607	0/0	a0000	0	7	5	2	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/1	a0001	237	221	31	44	115	8	22	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	1/0	a0002	237	219	54	37	93	6	28	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	a0003	237	6	6	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	a0004	237	2	1	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	a0005	175	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	a0006	237	1	0	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	a0007	237	1	0	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4C_chr12_7724383_7752375	1/1	a0001	213	336	80	45	161	9	39	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	a0002	213	94	3	32	47	5	7	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	a0003	213	15	12	3	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	a0004	213	2	2	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	a0005	213	1	1	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4D_chr12_8508503_8527366	1/1	a0001	215	277	33	55	143	14	30	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	a0002	215	118	56	19	29	2	12	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	a0003	215	7	7	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4E_chr12_8528305_8545905	1/1	a0001	219	438	96	80	199	16	45	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	a0002	219	2	2	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	a0003	219	1	0	0	1	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	a0004	219	1	0	0	0	0	1	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4F_chr2_70803643_70825599	1/0	a0001	589	152	37	37	49	7	21	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0002	589	145	3	21	103	5	13	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0003	589	59	15	9	32	0	3	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0004	589	13	12	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0005	589	8	7	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0006	589	6	6	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/1	a0007	589	5	0	2	0	1	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0008	589	4	3	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0009	589	3	0	0	3	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0010	589	2	2	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0011	589	2	0	0	0	2	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0012	589	2	2	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0013	589	1	0	0	0	0	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0014	100	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0015	589	1	0	0	0	0	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0016	589	1	0	0	1	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0017	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0018	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0019	589	1	0	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0020	589	1	0	0	0	1	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0021	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0022	589	1	0	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599