JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLEC4F_chr2_70803643_70825599	0/0	a0023	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0024	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	a0025	589	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4G_chr19_7723957_7737110	1/1	a0001	293	420	95	72	192	13	46	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0002	293	3	0	0	0	1	2	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0003	293	2	0	2	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0004	293	2	2	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0005	293	2	0	0	2	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0006	293	2	2	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	a0007	293	1	1	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4M_chr19_7758243_7774605	1/1	a0001	399	283	58	36	151	8	28	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0002	353	83	1	33	36	5	8	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0003	376	36	18	8	7	1	2	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0004	445	27	1	2	21	0	3	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0005	376	16	16	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0006	353	2	2	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0007	422	2	0	0	0	0	2	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0008	330	2	0	0	0	2	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0009	42	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0010	353	1	1	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0011	353	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0012	399	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0013	399	1	1	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0014	399	1	0	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0015	445	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0016	445	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	a0017	353	1	0	0	0	0	1	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC5A_chr7_141922357_141951974	1/1	a0001	188	379	79	75	165	16	42	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	a0002	89	3	0	0	3	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	a0003	188	3	3	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	a0004	188	1	0	1	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC6A_chr12_8450962_8483330	1/1	a0001	209	316	77	63	126	12	36	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	a0002	209	9	6	3	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	a0003	209	4	4	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	a0004	209	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	a0005	209	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	a0006	199	1	1	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC7A_chr12_10111777_10135199	1/1	a0001	247	434	86	74	215	16	41	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	a0002	237	7	0	3	1	0	3	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	a0003	247	5	4	1	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	a0004	247	3	3	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	a0005	247	1	1	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC9A_chr12_10025682_10071031	1/1	a0001	241	346	74	61	162	10	37	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	a0002	241	38	3	1	33	0	1	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	a0003	241	20	17	3	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	a0004	204	1	0	0	1	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	a0005	241	1	0	1	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLGN_chr4_140383453_140432648	1/0	a0001	610	278	75	56	107	9	30	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	a0002	610	57	4	12	34	1	6	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/1	a0003	610	14	11	1	0	1	0	copy fasta	CLGN	chr4	140383453	140432648