JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLGN_chr4_140383453_140432648	0/0	a0004	610	4	0	3	0	1	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	a0005	610	2	0	0	0	0	2	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	a0006	607	2	0	0	0	0	2	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	a0007	610	1	0	0	1	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLHC1_chr2_55167547_55237293	0/0	a0001	586	140	11	34	75	4	16	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/1	a0002	586	134	36	21	61	4	11	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0003	586	74	34	8	22	4	6	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	1/0	a0004	586	21	0	2	11	3	4	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0005	586	11	2	1	5	1	2	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0006	586	10	0	0	10	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0007	586	2	2	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0008	586	2	2	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0009	586	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0010	217	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0011	586	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0012	586	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0013	586	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0014	586	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0015	586	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0016	586	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0017	562	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	a0018	586	1	0	0	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLIC1_chr6_31725599_31741530	0/1	a0001	241	381	87	77	158	17	41	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	a0002	240	12	1	0	9	1	1	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	a0003	241	1	0	1	0	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	a0004	241	1	0	0	1	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC2_chrX_155271211_155339614	1/1	a0001	247	257	72	47	102	9	25	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	a0002	219	1	0	0	1	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC3_chr9_136989608_137001568	1/1	a0001	236	366	77	74	159	12	42	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0002	236	12	11	1	0	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0003	236	9	0	0	9	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0004	236	4	0	0	4	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0005	236	3	0	0	3	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0006	236	3	0	1	0	2	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	a0007	236	1	0	0	1	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC4_chr1_24740447_24849321	1/1	a0001	253	344	86	68	148	14	26	copy fasta	CLIC4	chr1	24740447	24849321
CLIC5_chr6_45893456_46020860	1/1	a0001	251	331	84	66	140	13	26	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0002	251	3	0	0	3	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0003	251	1	0	0	0	1	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0004	251	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0005	251	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0006	251	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0007	251	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	a0008	251	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC6_chr21_34663994_34723223	1/1	a0001	686	199	47	41	81	12	16	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0002	676	74	14	17	30	2	11	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0003	686	7	6	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0004	686	5	3	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0005	686	5	4	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0006	686	3	2	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223