JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLIC6_chr21_34663994_34723223	0/0	a0007	686	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0008	686	3	0	0	3	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0009	676	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0010	676	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0011	676	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0012	676	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0013	676	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0014	676	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0015	686	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0016	686	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0017	686	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0018	686	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0019	686	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0020	686	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	a0021	686	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLINT1_chr5_157780747_157864145	1/1	a0001	625	337	90	59	141	16	29	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	a0002	625	1	0	1	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	a0003	625	1	0	0	1	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	a0004	625	1	0	0	0	0	1	copy fasta	CLINT1	chr5	157780747	157864145
CLIP1_chr12_122266469_122427669	1/0	a0001	1438	152	73	17	40	7	14	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0002	1438	70	4	16	30	4	16	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/1	a0003	1438	6	0	1	0	3	1	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0004	1438	2	0	2	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0005	1438	1	0	1	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0006	268	1	0	0	0	0	1	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0007	1438	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	a0008	1438	1	0	1	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP2_chr7_74284407_74410935	0/1	a0001	1046	248	77	49	80	5	36	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0002	1046	18	8	2	7	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	1/0	a0003	1046	7	0	5	0	1	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0004	1046	1	1	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0005	1046	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0006	1046	1	0	0	0	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0007	1046	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	a0008	1046	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP3_chr19_36009660_36037873	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	1/1	a0001	547	412	94	80	173	16	47	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	a0002	547	2	0	0	2	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	a0003	547	1	0	0	0	0	1	copy fasta	CLIP3	chr19	36009660	36037873
CLIP4_chr2_29110415_29188808	1/1	a0001	705	270	86	52	91	13	26	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0002	705	8	1	5	0	1	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0003	705	5	0	0	5	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0004	705	2	2	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0005	705	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0006	705	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0007	705	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0008	705	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0009	705	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0010	705	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	a0011	705	1	0	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808