JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLPTM1_chr19_44950380_44998341	1/1	a0001	669	365	88	74	154	12	35	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0002	669	2	0	0	0	0	2	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0003	669	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0004	669	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0005	669	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0006	646	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0007	669	1	0	0	0	0	1	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0008	669	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	a0009	470	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPX_chr15_65143219_65190342	1/1	a0001	633	189	86	45	26	12	18	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	a0002	633	1	0	1	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLRN1_chr3_150921567_150977727	1/1	a0001	232	400	85	65	192	16	40	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	a0002	232	3	0	0	3	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	a0003	232	2	0	0	2	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	a0004	232	1	0	1	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	a0005	232	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	a0006	232	1	0	0	1	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN2_chr4_17510165_17532104	1/1	a0001	232	392	89	67	187	13	34	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	a0002	232	34	0	7	16	5	6	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	a0003	232	14	8	2	0	0	4	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	a0004	232	1	0	0	1	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	a0005	232	1	1	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN3_chr10_127872841_127897941	1/1	a0001	226	426	89	73	208	12	42	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0002	226	17	3	8	0	5	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0003	226	4	4	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0004	226	3	0	1	0	1	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0005	226	2	0	0	0	0	2	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0006	226	1	0	0	0	0	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0007	226	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0008	226	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	a0009	226	1	0	0	0	0	1	copy fasta	CLRN3	chr10	127872841	127897941
CLSPN_chr1_35727112_35774978	0/0	a0001	1339	149	55	18	69	1	6	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	1/0	a0002	1339	102	20	22	38	3	18	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0003	1339	11	10	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0004	1338	8	0	2	0	2	4	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0005	1339	5	5	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0006	1339	3	3	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/1	a0007	1339	3	0	1	0	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0008	1339	3	0	0	2	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0009	1339	2	0	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0010	1339	2	0	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0011	1339	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0012	1339	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0013	1339	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0014	1339	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0015	1339	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0016	1339	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0017	1339	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	a0018	1339	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSTN1_chr1_9723926_9828965	1/1	a0001	981	175	57	44	52	6	14	copy fasta	CLSTN1	chr1	9723926	9828965