JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLSTN1_chr1_9723926_9828965	0/0	a0002	981	78	23	10	32	2	11	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0003	981	8	0	1	7	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0004	981	2	0	2	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0005	123	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0006	981	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0007	981	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0008	981	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0009	981	1	0	1	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0010	981	1	0	0	0	0	1	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	a0011	981	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN2_chr3_139930185_140582397	0/0	a0001	955	59	34	17	5	0	3	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0002	955	43	24	8	7	0	4	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0003	953	2	2	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0004	953	2	2	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0005	955	2	1	1	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0006	955	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	a0007	955	1	0	0	0	0	1	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN3_chr12_7125371_7163945	1/1	a0001	956	375	82	62	175	16	38	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0002	956	5	3	1	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0003	956	4	2	1	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0004	956	2	0	2	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0005	956	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0006	956	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0007	956	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0008	956	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0009	956	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0010	956	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0011	956	1	0	0	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	a0012	956	1	0	0	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLTA_chr9_36185921_36217059	1/1	a0001	218	400	92	78	174	12	42	copy fasta	CLTA	chr9	36185921	36217059
CLTB_chr5_176387501_176421539	1/1	a0001	229	406	94	68	188	14	40	copy fasta	CLTB	chr5	176387501	176421539
CLTCL1_chr22_19174473_19296719	1/0	a0001	1640	180	44	32	80	6	17	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/1	a0002	1640	78	14	21	28	5	9	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0003	1640	21	19	2	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0004	1640	14	1	9	3	1	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0005	1640	13	0	0	13	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0006	1640	7	0	0	7	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0007	1640	6	5	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0008	1640	4	0	0	4	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0009	1640	3	2	0	0	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0010	1640	2	0	0	0	0	2	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0011	1640	2	0	2	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0012	1598	2	0	1	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0013	1640	2	0	0	2	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0014	1640	2	0	0	0	2	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0015	1640	1	0	0	0	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0016	1640	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0017	1640	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0018	1640	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0019	1640	1	0	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719