JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLU_chr8_27591917_27619700	0/0	a0007	449	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0008	449	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0009	449	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0010	449	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLVS1_chr8_61282970_61506629	1/1	a0001	354	184	60	48	50	4	20	copy fasta	CLVS1	chr8	61282970	61506629
CLVS2_chr6_122991235_123077925	1/1	a0001	327	335	92	59	136	12	34	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	a0002	327	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLXN_chr8_48718391_48740268	1/1	a0001	211	393	94	72	169	14	42	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	a0002	53	1	0	0	1	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLYBL_chr13_99601690_99897570	0/1	a0001	340	173	67	38	39	7	21	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	1/0	a0002	340	20	4	9	3	2	1	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0003	340	11	0	2	8	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0004	340	6	0	0	5	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0005	258	2	0	1	1	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0006	340	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0007	340	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0008	340	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0009	340	1	0	0	0	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0010	340	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	a0011	10	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CMA1_chr14_24500353_24513265	1/1	a0001	247	424	91	58	216	18	39	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0002	37	2	0	0	2	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0003	247	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0004	247	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0005	247	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0006	247	1	1	0	0	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0007	247	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	a0008	247	1	0	0	0	0	1	copy fasta	CMA1	chr14	24500353	24513265
CMAS_chr12_22041218_22070668	1/1	a0001	434	448	98	80	203	16	49	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	a0002	434	1	0	0	1	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	a0003	434	1	0	0	0	0	1	copy fasta	CMAS	chr12	22041218	22070668
CMBL_chr5_10272595_10312902	1/1	a0001	245	349	94	77	126	12	38	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	a0002	245	1	0	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMC1_chr3_28236619_28330142	1/1	a0001	106	338	78	72	136	12	38	copy fasta	CMC1	chr3	28236619	28330142
CMC2_chr16_80961448_81011885	1/1	a0001	79	213	36	40	102	10	23	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	a0002	79	192	56	20	107	2	7	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	a0003	79	3	0	0	3	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC4_chrX_155056622_155076136	1/1	a0001	68	291	72	52	120	13	32	copy fasta	CMC4	chrX	155056622	155076136
CMC4_chrX_155056622_155076136	0/0	a0002	60	1	0	0	1	0	0	copy fasta	CMC4	chrX	155056622	155076136
CMIP_chr16_81439808_81716762	1/1	a0001	773	267	88	53	88	8	28	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	a0002	773	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMKLR1_chr12_108283046_108344311	1/1	a0001	373	387	92	68	162	15	48	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0002	373	6	0	0	6	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0003	373	2	0	1	0	1	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0004	373	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0005	373	1	0	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0006	373	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0007	373	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	a0008	373	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR2_chr2_206170316_206218371	1/1	a0001	355	177	29	25	90	11	20	copy fasta	CMKLR2	chr2	206170316	206218371