JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CMKLR2_chr2_206170316_206218371	0/0	a0002	355	132	45	35	29	5	18	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0003	355	3	3	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0004	355	3	0	0	3	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0005	355	2	1	1	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0006	148	1	1	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0007	235	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0008	355	1	0	1	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0009	359	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	a0010	19	1	1	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMPK1_chr1_47328790_47383839	0/0	a0001	228	232	77	32	91	8	24	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	1/1	a0002	228	114	15	14	61	4	18	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	a0003	228	15	0	5	10	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	a0004	228	3	0	3	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK2_chr2_6843316_6870907	1/1	a0001	449	355	87	67	147	15	37	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	a0002	449	29	3	1	24	1	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	a0003	449	4	4	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	a0004	449	2	2	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	a0005	449	1	0	0	0	0	1	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	a0006	449	1	0	0	1	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMSS1_chr3_99812862_100186732	0/0	a0001	279	196	62	33	64	9	28	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	a0002	279	35	2	13	6	2	12	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	a0003	279	1	0	0	0	1	0	copy fasta	CMSS1	chr3	99812862	100186732
CMTM1_chr16_66561439_66584135	1/1	a0001	286	383	85	63	186	14	33	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0002	111	5	0	5	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0003	286	3	3	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0004	286	2	2	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0005	286	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0006	286	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0007	286	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0008	286	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	a0009	286	1	0	0	0	0	1	copy fasta	CMTM1	chr16	66561439	66584135
CMTM2_chr16_66574463_66593275	1/1	a0001	248	294	63	53	135	15	26	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	a0002	248	112	34	16	55	1	6	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	a0003	248	1	0	0	1	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	a0004	248	1	0	1	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	a0005	248	1	1	0	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	a0006	234	1	0	0	1	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM3_chr16_66599704_66618887	1/1	a0001	182	423	100	72	193	16	40	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	a0002	182	2	0	2	0	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	a0003	182	1	0	0	1	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM4_chr16_66609750_66701743	1/1	a0001	208	320	80	46	150	10	32	copy fasta	CMTM4	chr16	66609750	66701743
CMTM5_chr14_23372046_23384772	1/1	a0001	223	408	87	76	182	17	44	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0002	223	9	9	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0003	223	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0004	223	1	0	1	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0005	223	1	0	1	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0006	223	1	0	0	0	1	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	a0007	223	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM6_chr3_32476312_32507852	1/1	a0001	183	382	84	71	174	14	37	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	a0002	183	1	0	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852