JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CMTM6_chr3_32476312_32507852	0/0	a0003	183	1	0	0	0	0	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM7_chr3_32386853_32460528	1/1	a0001	175	366	84	71	159	12	38	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	a0002	175	1	0	0	1	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	a0003	175	1	0	1	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM8_chr3_32233680_32375321	1/1	a0001	173	339	88	71	128	8	42	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	a0002	173	2	0	0	2	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	a0003	173	2	2	0	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	a0004	173	1	0	1	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTR1_chr6_37428221_37486508	1/1	a0001	835	357	94	50	157	10	44	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	a0002	835	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR2_chr16_71276392_71294402	0/0	a0001	770	184	24	20	110	3	27	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0002	770	121	34	23	46	8	10	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	1/0	a0003	770	69	2	12	50	0	4	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0004	770	27	1	14	5	2	5	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0005	770	18	18	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0006	770	11	10	1	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0007	770	2	2	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0008	770	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0009	770	1	0	0	0	1	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0010	770	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0011	770	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	a0012	770	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMYA5_chr5_79684836_79805222	1/0	a0001	4069	60	3	13	25	4	14	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0002	4069	37	1	3	31	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0003	4069	28	12	5	8	2	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0004	4069	25	0	0	24	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0005	4069	17	1	7	5	0	4	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0006	4069	14	0	1	12	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0007	4069	11	9	1	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0008	4069	11	0	0	11	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0009	4069	9	8	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0010	4069	8	1	2	2	1	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0011	4069	7	0	7	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0012	4069	6	6	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0013	4069	5	5	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0014	4069	5	0	0	5	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0015	4069	5	5	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0016	4069	4	0	0	4	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0017	4069	4	1	3	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0018	4069	4	0	0	4	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0019	4069	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0020	4069	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0021	4069	3	0	2	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0022	4069	3	0	0	2	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0023	4069	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/1	a0024	4069	3	0	0	1	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0025	4069	3	0	0	3	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0026	4069	3	0	0	3	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0027	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0028	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222