JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CMYA5_chr5_79684836_79805222	0/0	a0029	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0030	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0031	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0032	4069	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0033	4069	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0034	4069	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0035	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0036	4069	2	0	0	0	2	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0037	4069	2	0	0	0	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0038	4069	2	0	0	0	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0039	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0040	4069	2	1	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0041	4069	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0042	4069	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0043	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0044	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0045	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0046	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0047	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0048	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0049	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0050	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0051	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0052	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0053	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0054	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0055	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0056	4069	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0057	4069	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0058	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0059	4069	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0060	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0061	732	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0062	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0063	4069	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0064	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0065	4069	1	0	0	0	1	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0066	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0067	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0068	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0069	4069	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0070	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0071	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0072	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0073	1436	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0074	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0075	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0076	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0077	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0078	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222