Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS15_chr11_130443645_130481645	0/0	a0012	950	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0013	950	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0014	950	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0015	950	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0016	950	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0017	950	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0018	950	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	a0019	950	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS16_chr5_5135330_5325304	0/1	a0001	1224	86	28	24	18	6	9	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0002	1224	69	11	28	9	4	17	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0003	1224	39	13	5	17	1	3	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0004	1224	34	19	1	10	0	4	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0005	1224	17	1	6	10	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0006	1224	12	0	0	12	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	1/0	a0007	1224	9	0	0	7	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0008	1224	7	2	0	4	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0009	1224	7	1	0	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0010	1224	6	0	0	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0011	1224	6	0	1	4	1	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0012	1224	5	0	0	5	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0013	1224	4	0	0	4	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0014	1224	3	0	0	3	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0015	1224	3	0	0	3	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0016	1224	2	2	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0017	449	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0018	1224	1	0	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0019	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0020	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0021	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0022	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0023	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0024	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0025	1224	1	0	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0026	1224	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0027	1224	1	0	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0028	1224	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0029	1224	1	0	0	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0030	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0031	1224	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0032	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0033	1224	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0034	1224	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0035	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0036	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0037	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0038	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	a0039	1224	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS17_chr15_99966437_100346975	0/0	a0001	1095	65	22	16	16	5	6	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	a0002	1095	60	22	8	21	0	9	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	1/0	a0003	1095	38	8	9	14	2	4	copy fasta	ADAMTS17	chr15	99966437	100346975