JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CMYA5_chr5_79684836_79805222	0/0	a0079	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0080	4069	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0081	4069	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0082	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0083	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	a0084	4069	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CNBD1_chr8_86861415_87387859	0/0	a0001	436	130	49	34	32	8	7	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0002	436	10	8	2	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0003	436	4	4	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0004	434	4	4	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0005	436	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0006	436	1	0	0	0	0	1	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0007	436	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	a0008	436	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD2_chr20_35963590_36035700	1/1	a0001	576	139	48	28	43	8	10	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0002	576	104	36	15	44	2	7	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0003	576	12	0	1	0	2	9	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0004	576	2	0	0	2	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0005	576	2	1	0	0	0	1	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0006	576	1	0	0	0	0	1	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0007	576	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0008	576	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0009	576	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0010	576	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0011	576	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0012	576	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0013	576	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	a0014	576	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBP_chr3_129162827_129188896	1/1	a0001	177	430	92	80	194	14	48	copy fasta	CNBP	chr3	129162827	129188896
CNDP1_chr18_74529500_74592212	0/1	a0001	508	167	14	31	102	6	13	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	1/0	a0002	507	87	25	24	8	8	21	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0003	508	36	5	5	23	2	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0004	507	18	12	2	0	0	4	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0005	508	13	4	3	4	0	2	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0006	508	13	2	2	5	1	3	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0007	507	9	5	3	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0008	507	8	5	3	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0009	508	6	1	0	4	1	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0010	507	4	2	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0011	506	3	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0012	508	3	2	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0013	507	3	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0014	508	3	2	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0015	507	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0016	507	2	1	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0017	506	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0018	507	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0019	507	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0020	508	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0021	508	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212