JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNDP1_chr18_74529500_74592212	0/0	a0022	508	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0023	508	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0024	507	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0025	507	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0026	508	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0027	508	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	a0028	508	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP2_chr18_74491363_74528454	1/1	a0001	475	313	82	56	124	16	33	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0002	475	95	9	24	49	2	11	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0003	475	8	8	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0004	475	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0005	475	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0006	475	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0007	475	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0008	475	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0009	475	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0010	475	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	a0011	475	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNEP1R1_chr16_50020225_50042081	1/1	a0001	125	378	98	66	162	14	36	copy fasta	CNEP1R1	chr16	50020225	50042081
CNFN_chr19_42382019_42395297	1/1	a0001	112	273	88	44	102	10	27	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	a0002	78	1	1	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	a0003	112	1	0	0	0	0	1	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	a0004	112	1	1	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNGA1_chr4_47930977_48021681	1/1	a0001	686	270	69	56	102	16	25	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	a0002	686	93	20	8	55	0	10	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	a0003	686	1	1	0	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	a0004	686	1	0	0	1	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	a0005	686	1	0	0	0	0	1	copy fasta	CNGA1	chr4	47930977	48021681
CNGA2_chrX_151729746_151750564	1/1	a0001	664	225	24	49	119	8	23	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0002	664	46	0	6	33	3	4	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0003	664	36	28	1	0	2	5	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0004	664	10	8	2	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0005	664	4	4	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0006	664	3	3	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0007	664	2	2	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0008	14	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0009	664	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0010	664	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0011	664	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0012	170	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0013	644	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0014	664	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0015	664	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0016	664	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	a0017	73	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA3_chr2_98341456_98403601	1/1	a0001	694	315	64	62	140	15	32	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0002	694	12	6	0	6	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0003	694	2	0	0	2	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0004	694	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0005	694	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601