JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CNGA3_chr2_98341456_98403601	0/0	a0006	694	1	0	0	0	1	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0007	694	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0008	694	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0009	694	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	a0010	694	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA4_chr11_6234089_6249479	1/1	a0001	575	359	70	63	170	15	39	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0002	575	17	7	2	8	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0003	575	15	11	2	0	2	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0004	575	4	0	4	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0005	575	3	0	0	3	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0006	575	3	0	1	0	1	1	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0007	575	2	0	0	2	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0008	575	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0009	575	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0010	575	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0011	575	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0012	575	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0013	575	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0014	575	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0015	575	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	a0016	575	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGB1_chr16_57877340_57976128	0/0	a0001	1251	183	26	30	99	9	19	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	1/1	a0002	1251	56	14	6	27	1	6	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0003	1251	21	1	9	8	0	3	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0004	1251	8	8	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0005	1251	7	0	3	1	2	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0006	1252	6	6	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0007	1251	6	1	1	4	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0008	1251	5	2	0	1	1	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0009	1251	5	5	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0010	1251	5	3	0	0	2	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0011	1251	4	1	2	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0012	1251	4	3	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0013	1251	3	0	3	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0014	1251	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0015	1251	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0016	1251	2	0	0	2	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0017	1251	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0018	1251	2	1	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0019	1251	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0020	1251	2	0	2	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0021	1251	2	0	0	0	1	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0022	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0023	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0024	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0025	122	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0026	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0027	1251	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0028	1252	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	a0029	1252	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128